They played together in NT, against the same teams and Peja was always the beta, never alpha. Bodiroga was always the better player on the floor.
Regarding not playing in NBA, who cares. Peja was a player who at his peak was a monster but it was all too short, the rest of his career he was a shadow of that. That is not the mark of a great player. Think Grant Hill or Penny Hardaway (my favorite childhood player in NBA). Just not long enough at top level and prime to be in discussion for all time best.
Not saying it was Peja's fault, injuries etc. But that is case with Hill, Hardaway and dozens of players. Peja is one of the what ifs of our basketball history.